Castedo Ellerman

21stC Publishing

Baseprints

https://try.perm.pub (Your citable, living documents. Anywhere and forever.)

Related Libraries:

• epijats : automated typesetting, JATS XML rendering library/utility
• hidos : document successions library/utility
• sshsig : SSHSIG format cryptographic signature verification library

Copyediting

https://copyAId.it (text copyediting/proofreading utility using OpenAI GPT API)

Research Software

Tree sequence Community (github.com/tskit-dev)

• msprime : population genetics simulator
  Journal article: Baumdicker, Franz et al. "Efficient ancestry and mutation simulation with msprime 1.0." Genetics, March 2022; doi:10.1093/genetics/iyab229
• tskit : the tree sequence toolkit
• tskit containers

Novembre Lab (github.com/NovembreLab)

• montecarloop : caching and analysis of estimates from Monte Carlo simulations
• spatial-sfs : spatial distribution of rare deleterious alleles

Advanced Population & Medical Genetics Class

• EPI511 minihapmap.py : upgrade to code used in Alkes Price's EPI511 course at Harvard

Other

• genomology : Genomic genealogy library in R

Development Tools

• cnest : simple scripts for personal (rootless) persistent parallel containers
• unexceptional : helper functions for returning unexceptional Exception objects
• JSOML : JSON semantics in XML file syntax
• git-prepr : git grafting scripts
• jinjagen : short Python script using jinja2 to generate static websites

More

• gitlab.com/castedo
• github.com/castedo
• popgen.es